PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28822_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 148aa    MW: 16419.8 Da    PI: 10.4006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28822_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.82e-08111138330
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                  +a n +E+rRR +i++++e+L++l P++
  RrC28822_p1 111 EARNVAEKRRRTDIKTKIENLKQLTPNC 138
                  578***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.89E-6105141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-7108139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.842108148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5112138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MNNDQESVQF WSSLLHSVAS SDPKDDHLPE ISSPLMVMST SMAIDVSLKP LNAPGDGQKA  60
GPQKAIAETG DKSIDKGGQR SAKKQIQVKK KEGEKEEMKN LSKSKRSRTN EARNVAEKRR  120
RTDIKTKIEN LKQLTPNCKK VHTICLPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651211.13e-74PREDICTED: putative transcription factor bHLH056
TrEMBLA0A078F1W75e-74A0A078F1W7_BRANA; BnaA07g24700D protein
STRINGBra004043.1-P6e-58(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1574077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-07phytochrome interacting factor 3